3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00197

Details:

PFam ID : PF00197

PFam Domain Description : Trypsin and protease inhibitor

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 211

Average sequence length: 161.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00197	C6K8D0_SOYBN_30_222	91.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00197	C6K8D0_SOYBN_30_222	100

Sequence based PCA Plot of the family - PF00197 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=22 Length=8
Motif2 Start=13 Length=8
Motif3 Start=38 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay