3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00196

Details:

PFam ID : PF00196

PFam Domain Description : Bacterial regulatory proteins, luxR family

Number of Sequence in 50% Dataset : 336

Number of Sequence in Full Dataset : 10623

Average sequence length: 57.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00196	D0SM59_ACIJU_308_371	54.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00196	D0SM59_ACIJU_308_371	100

Sequence based PCA Plot of the family - PF00196 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=24 Length=8
Motif2 Start=34 Length=28
Motif3 Start=7 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay