3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00194

Details:

PFam ID : PF00194

PFam Domain Description : Eukaryotic-type carbonic anhydrase

Number of Sequence in 50% Dataset : 380

Number of Sequence in Full Dataset : 1094

Average sequence length: 206.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00194	E1Z3D4_9CHLO_67_351	92.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00194	E2C9P2_9HYME_2_76	99.9

Sequence based PCA Plot of the family - PF00194 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay