3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00193

Details:

PFam ID : PF00193

PFam Domain Description : Extracellular link domain

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 199

Average sequence length: 90.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00193	C3Z142_BRAFL_1_55	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00193	F2Y257_9PHYC_120_217	100

Sequence based PCA Plot of the family - PF00193 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=18 Length=11
Motif2 Start=1 Length=11
Motif3 Start=46 Length=8
Motif4 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay