3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00190

Details:

PFam ID : PF00190

PFam Domain Description : Cupin

Number of Sequence in 50% Dataset : 150

Number of Sequence in Full Dataset : 1410

Average sequence length: 139.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00190	A2R5R9_ASPNC_55_173	52.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00190	E5A0C6_LEPMC_286_370	99.7

Sequence based PCA Plot of the family - PF00190 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=39 Length=8
Motif2 Start=1 Length=18
Motif3 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay