3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00188

Details:

PFam ID : PF00188

PFam Domain Description : Cysteine-rich secretory protein family

Number of Sequence in 50% Dataset : 833

Number of Sequence in Full Dataset : 2838

Average sequence length: 124.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00188	A7SPV1_NEMVE_1_54	92.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00188	B9S7V1_RICCO_33_106	99.8

Sequence based PCA Plot of the family - PF00188 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=11
Motif2 Start=2 Length=17
Motif3 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay