3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00187

Details:

PFam ID : PF00187

PFam Domain Description : Chitin recognition protein

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 398

Average sequence length: 39.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00187	B0QTU6_HAEPR_3_51	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00187	D8SVX4_SELML_1_24	97.7

Sequence based PCA Plot of the family - PF00187 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=15 Length=8
Motif2 Start=2 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay