3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00186

Details:

PFam ID : PF00186

PFam Domain Description : Dihydrofolate reductase

Number of Sequence in 50% Dataset : 233

Number of Sequence in Full Dataset : 1355

Average sequence length: 157.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00186	B0QTU6_HAEPR_3_51	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00186	Q64742_CRIGR_4_44	100

Sequence based PCA Plot of the family - PF00186 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=12 Length=22

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay