3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00185

Details:

PFam ID : PF00185

PFam Domain Description : Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain

Number of Sequence in 50% Dataset : 80

Number of Sequence in Full Dataset : 2756

Average sequence length: 154.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00185	D3UWY5_XENBS_5_71	77.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00185	F0HKW1_9ACTN_156_351	100

Sequence based PCA Plot of the family - PF00185 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=69 Length=20
Motif2 Start=1 Length=14
Motif3 Start=46 Length=22

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay