3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00184

Details:

PFam ID : PF00184

PFam Domain Description : Neurohypophysial hormones, C-terminal Domain

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 76

Average sequence length: 76.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00184	D3PFK0_9MAXI_49_139	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00184	D3PFK0_9MAXI_49_139	100

Sequence based PCA Plot of the family - PF00184 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=39 Length=11
Motif2 Start=14 Length=8
Motif3 Start=1 Length=8
Motif4 Start=65 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay