3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00183

Details:

PFam ID : PF00183

PFam Domain Description : Hsp90 protein

Number of Sequence in 50% Dataset : 173

Number of Sequence in Full Dataset : 1718

Average sequence length: 336.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00183	D4IXY1_BUTFI_5_155	56.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00183	B9G4R9_ORYSJ_351_416	99.8

Sequence based PCA Plot of the family - PF00183 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=1 Length=17
Motif3 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay