3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00182

Details:

PFam ID : PF00182

PFam Domain Description : Chitinase class I

Number of Sequence in 50% Dataset : 103

Number of Sequence in Full Dataset : 765

Average sequence length: 161.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00182	E8WJ98_GEOS8_141_217	80.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00182	B8C9K9_THAPS_102_221	99.2

Sequence based PCA Plot of the family - PF00182 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=137 Length=8
Motif2 Start=5 Length=8
Motif3 Start=153 Length=8
Motif4 Start=165 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay