3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00180

Details:

PFam ID : PF00180

PFam Domain Description : Isocitrate/isopropylmalate dehydrogenase

Number of Sequence in 50% Dataset : 124

Number of Sequence in Full Dataset : 2953

Average sequence length: 328.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00180	D9PFN2_9ZZZZ_4_60	52.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00180	E2EIR4_9NEOP_1_89	98.7

Sequence based PCA Plot of the family - PF00180 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=63 Length=8
Motif3 Start=32 Length=8
Motif4 Start=46 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay