3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00179

Details:

PFam ID : PF00179

PFam Domain Description : Ubiquitin-conjugating enzyme

Number of Sequence in 50% Dataset : 260

Number of Sequence in Full Dataset : 2925

Average sequence length: 132.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00179	E9BH85_LEIDO_92_212	89.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00179	Q4DU90_TRYCR_22_169	100

Sequence based PCA Plot of the family - PF00179 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=11
Motif2 Start=57 Length=8
Motif3 Start=8 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay