3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00175

Details:

PFam ID : PF00175

PFam Domain Description : Oxidoreductase NAD-binding domain

Number of Sequence in 50% Dataset : 838

Number of Sequence in Full Dataset : 6166

Average sequence length: 104.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00175	Q73FQ8_WOLPM_2_110	98.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00175	O07073_BURCE_254_322	99.9

Sequence based PCA Plot of the family - PF00175 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=124 Length=8
Motif2 Start=62 Length=8
Motif3 Start=144 Length=8
Motif4 Start=2 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay