3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00174

Details:

PFam ID : PF00174

PFam Domain Description : Oxidoreductase molybdopterin binding domain

Number of Sequence in 50% Dataset : 201

Number of Sequence in Full Dataset : 1715

Average sequence length: 158.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00174	Q6M1R2_CORGL_87_172	72.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00174	Q4PBW4_USTMA_34_258	100

Sequence based PCA Plot of the family - PF00174 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=93 Length=19
Motif3 Start=122 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay