3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00173

Details:

PFam ID : PF00173

PFam Domain Description : Cytochrome b5-like Heme/Steroid binding domain

Number of Sequence in 50% Dataset : 190

Number of Sequence in Full Dataset : 2520

Average sequence length: 83.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00173	D8LFE2_ECTSI_1_54	75.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00173	C4JEY7_UNCRE_1170_1313	98.5

Sequence based PCA Plot of the family - PF00173 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=43 Length=8
Motif2 Start=32 Length=8
Motif3 Start=23 Length=8
Motif4 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay