3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00172

Details:

PFam ID : PF00172

PFam Domain Description : Fungal Zn(2)-Cys(6) binuclear cluster domain

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 5686

Average sequence length: 38.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00172	A7E526_SCLS1_65_112	72.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00172	A2QYF5_ASPNC_2_69	99.8

Sequence based PCA Plot of the family - PF00172 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=56 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay