3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00171

Details:

PFam ID : PF00171

PFam Domain Description : Aldehyde dehydrogenase family

Number of Sequence in 50% Dataset : 1046

Number of Sequence in Full Dataset : 13276

Average sequence length: 398.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00171	B9TK98_RICCO_1_68	65.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00171	E8G1S0_SALMO_5_130	99.8

Sequence based PCA Plot of the family - PF00171 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=22 Length=8
Motif2 Start=1 Length=8
Motif3 Start=64 Length=8
Motif4 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay