3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00170

Details:

PFam ID : PF00170

PFam Domain Description : bZIP transcription factor

Number of Sequence in 50% Dataset : 145

Number of Sequence in Full Dataset : 1862

Average sequence length: 60.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00170	B7ZYA0_MAIZE_177_221	11.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00170	C1FIP6_MICSR_94_176	90.8

Sequence based PCA Plot of the family - PF00170 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=41 Length=8
Motif2 Start=32 Length=8
Motif3 Start=5 Length=26

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay