3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00168

Details:

PFam ID : PF00168

PFam Domain Description : C2 domain

Number of Sequence in 50% Dataset : 1469

Number of Sequence in Full Dataset : 6067

Average sequence length: 85.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00168	A9V5K0_MONBE_41_126	88.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00168	D2V4J8_NAEGR_509_604	95.5

Sequence based PCA Plot of the family - PF00168 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=84 Length=8
Motif2 Start=1 Length=11
Motif3 Start=36 Length=8
Motif4 Start=62 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay