3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00167

Details:

PFam ID : PF00167

PFam Domain Description : FGF binding protein 1 (FGF-BP1)

Number of Sequence in 50% Dataset : 123

Number of Sequence in Full Dataset : 363

Average sequence length: 107.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00167	B6S749_GVPU_101_217	72.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00167	D1LX09_SACKO_73_230	100

Sequence based PCA Plot of the family - PF00167 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=41 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay