3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00166

Details:

PFam ID : PF00166

PFam Domain Description : Chaperonin 10 Kd subunit

Number of Sequence in 50% Dataset : 77

Number of Sequence in Full Dataset : 1372

Average sequence length: 89.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00166	A8PXQ5_MALGO_1_58	53.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00166	B8BS10_THAPS_72_162	99.6

Sequence based PCA Plot of the family - PF00166 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=83 Length=14
Motif2 Start=58 Length=8
Motif3 Start=15 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay