3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00165

Details:

PFam ID : PF00165

PFam Domain Description : Bacterial regulatory helix-turn-helix proteins, AraC family

Number of Sequence in 50% Dataset : 121

Number of Sequence in Full Dataset : 224

Average sequence length: 38.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00165	A8NT45_BRUMA_1_37	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00165	HRPB_RALSO_381_423	96.4

Sequence based PCA Plot of the family - PF00165 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=24 Length=8
Motif3 Start=34 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay