3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00160

Details:

PFam ID : PF00160

PFam Domain Description : Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Number of Sequence in 50% Dataset : 305

Number of Sequence in Full Dataset : 4479

Average sequence length: 157.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00160	C5KWI9_9ALVE_1_58	64.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00160	A8G5U5_PROM2_1_57	100

Sequence based PCA Plot of the family - PF00160 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=79 Length=11
Motif2 Start=102 Length=8
Motif3 Start=2 Length=53

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay