3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00153

Details:

PFam ID : PF00153

PFam Domain Description : Mitochondrial carrier protein

Number of Sequence in 50% Dataset : 1828

Number of Sequence in Full Dataset : 14584

Average sequence length: 94.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00153	C5K6R1_9ALVE_111_180	95.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00153	E2FIU3_9EUPU_1_42	99.9

Sequence based PCA Plot of the family - PF00153 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=54 Length=8
Motif3 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay