3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00152

Details:

PFam ID : PF00152

PFam Domain Description : tRNA synthetases class II (D, K and N)

Number of Sequence in 50% Dataset : 240

Number of Sequence in Full Dataset : 3985

Average sequence length: 344.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00152	Q8I3W4_PLAF7_594_1126	72.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00152	Q8I3W4_PLAF7_594_1126	100

Sequence based PCA Plot of the family - PF00152 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=163 Length=14
Motif2 Start=72 Length=8
Motif3 Start=95 Length=8
Motif4 Start=106 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay