3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00150

Details:

PFam ID : PF00150

PFam Domain Description : Cellulase (glycosyl hydrolase family 5)

Number of Sequence in 50% Dataset : 639

Number of Sequence in Full Dataset : 2454

Average sequence length: 276.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00150	C0A2N1_9BACT_2_188	98.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00150	E1ZF50_9CHLO_79_314	99.8

Sequence based PCA Plot of the family - PF00150 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=29 Length=17
Motif2 Start=1 Length=11
Motif3 Start=69 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay