3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00149

Details:

PFam ID : PF00149

PFam Domain Description : Calcineurin-like phosphoesterase

Number of Sequence in 50% Dataset : 2628

Number of Sequence in Full Dataset : 10622

Average sequence length: 203.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00149	O64184_BPSPB_1_227	98.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00149	E3AZS3_9SPHI_6_205	94.2

Sequence based PCA Plot of the family - PF00149 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=3 Length=8
Motif2 Start=30 Length=8
Motif3 Start=147 Length=8
Motif4 Start=66 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay