3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00148

Details:

PFam ID : PF00148

PFam Domain Description : Nitrogenase component 1 type Oxidoreductase

Number of Sequence in 50% Dataset : 250

Number of Sequence in Full Dataset : 1716

Average sequence length: 369.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00148	B0PEA1_9FIRM_30_431	87.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00148	F2YGK6_9CHLO_1_185	100

Sequence based PCA Plot of the family - PF00148 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=47 Length=11
Motif4 Start=34 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay