3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00147

Details:

PFam ID : PF00147

PFam Domain Description : Fibritin C-terminal region

Number of Sequence in 50% Dataset : 224

Number of Sequence in Full Dataset : 1401

Average sequence length: 160.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00147	A7SVB6_NEMVE_5_56	89.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00147	C1JCG3_HYPNO_88_132	99

Sequence based PCA Plot of the family - PF00147 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=8
Motif2 Start=14 Length=8
Motif3 Start=60 Length=26

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay