3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00145

Details:

PFam ID : PF00145

PFam Domain Description : C-5 cytosine-specific DNA methylase

Number of Sequence in 50% Dataset : 924

Number of Sequence in Full Dataset : 3400

Average sequence length: 251.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00145	D1N9Z0_9BACT_18_371	83.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00145	Q9YRD2_9VIRU_1_85	99.9

Sequence based PCA Plot of the family - PF00145 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=43 Length=8
Motif3 Start=23 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay