3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00144

Details:

PFam ID : PF00144

PFam Domain Description : Beta-lactamase

Number of Sequence in 50% Dataset : 1982

Number of Sequence in Full Dataset : 5172

Average sequence length: 317.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00144	B2LWF4_ECOLX_1_108	90.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00144	Q849R4_KLEOX_27_135	99.5

Sequence based PCA Plot of the family - PF00144 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=14 Length=24
Motif3 Start=47 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay