3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00143

Details:

PFam ID : PF00143

PFam Domain Description : Interferon alpha/beta domain

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 212

Average sequence length: 143.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00143	A8E6F4_XENTR_52_208	76.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00143	E2IWZ3_PTEVA_31_201	100

Sequence based PCA Plot of the family - PF00143 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=57 Length=8
Motif2 Start=81 Length=8
Motif3 Start=27 Length=11
Motif4 Start=124 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay