3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00142

Details:

PFam ID : PF00142

PFam Domain Description : FerA (NUC095) domain

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 1932

Average sequence length: 136.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00142	C4V375_9FIRM_9_93	73.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00142	D3JYU9_9BACT_1_40	99.6

Sequence based PCA Plot of the family - PF00142 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=52 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay