3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00139

Details:

PFam ID : PF00139

PFam Domain Description : Legume lectin domain

Number of Sequence in 50% Dataset : 242

Number of Sequence in Full Dataset : 822

Average sequence length: 196.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00139	D7MWF4_ARALL_89_172	80.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00139	C5XJR6_SORBI_39_130	100

Sequence based PCA Plot of the family - PF00139 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=17
Motif2 Start=2 Length=11
Motif3 Start=40 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay