3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00136

Details:

PFam ID : PF00136

PFam Domain Description : DNA polymerase family B

Number of Sequence in 50% Dataset : 294

Number of Sequence in Full Dataset : 1803

Average sequence length: 323.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00136	Q9WSQ8_9BETA_1_149	76.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00136	A2HKZ5_TRIVA_238_351	99.8

Sequence based PCA Plot of the family - PF00136 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=192 Length=8
Motif3 Start=18 Length=8
Motif4 Start=212 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay