3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00135

Details:

PFam ID : PF00135

PFam Domain Description : Carboxylesterase family

Number of Sequence in 50% Dataset : 1489

Number of Sequence in Full Dataset : 3793

Average sequence length: 403.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00135	A7A4D9_BIFAD_1_49	95.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00135	E9HPD2_DAPPU_447_557	99.9

Sequence based PCA Plot of the family - PF00135 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=92 Length=8
Motif2 Start=79 Length=8
Motif3 Start=111 Length=11
Motif4 Start=1 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay