3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00134

Details:

PFam ID : PF00134

PFam Domain Description : Cyclin, N-terminal domain

Number of Sequence in 50% Dataset : 512

Number of Sequence in Full Dataset : 2304

Average sequence length: 123.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00134	Q23TX1_TETTH_78_227	88.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00134	A5DLG2_PICGU_1_126	99.9

Sequence based PCA Plot of the family - PF00134 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=111 Length=8
Motif4 Start=74 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay