3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00133

Details:

PFam ID : PF00133

PFam Domain Description : tRNA synthetases class I (I, L, M and V)

Number of Sequence in 50% Dataset : 278

Number of Sequence in Full Dataset : 5608

Average sequence length: 380.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00133	A6N6X2_9RHIZ_7_72	90.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00133	E2LNL4_MONPE_2_143	100

Sequence based PCA Plot of the family - PF00133 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=57 Length=8
Motif2 Start=243 Length=11
Motif3 Start=470 Length=8
Motif4 Start=198 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay