3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00132

Details:

PFam ID : PF00132

PFam Domain Description : Bacterial transferase hexapeptide (six repeats)

Number of Sequence in 50% Dataset : 314

Number of Sequence in Full Dataset : 20120

Average sequence length: 34.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00132	B7GHA3_ANOFW_287_322	75.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00132	C6A1S5_THESM_244_295	70

Sequence based PCA Plot of the family - PF00132 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay