3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00131

Details:

PFam ID : PF00131

PFam Domain Description : Metallothionein

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 118

Average sequence length: 59.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00131	F2UKL5_9EUKA_343_405	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00131	A1YAQ5_CLAGA_1_34	84.6

Sequence based PCA Plot of the family - PF00131 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=25 Length=8
Motif2 Start=1 Length=8
Motif3 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay