3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00128

Details:

PFam ID : PF00128

PFam Domain Description : Alpha amylase, catalytic domain

Number of Sequence in 50% Dataset : 598

Number of Sequence in Full Dataset : 8907

Average sequence length: 253.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00128	Q0QJY3_9BIFI_1_157	81.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00128	E1I1P0_ECOLX_5_242	100

Sequence based PCA Plot of the family - PF00128 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=66 Length=11
Motif2 Start=33 Length=8
Motif3 Start=3 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay