3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00127

Details:

PFam ID : PF00127

PFam Domain Description : Copper binding proteins, plastocyanin/azurin family

Number of Sequence in 50% Dataset : 118

Number of Sequence in Full Dataset : 707

Average sequence length: 101.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00127	Q6KGV5_BRUAB_4_72	83.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00127	B5WCJ0_9BURK_10_71	100

Sequence based PCA Plot of the family - PF00127 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=10 Length=8
Motif3 Start=45 Length=8
Motif4 Start=117 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay