3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00126

Details:

PFam ID : PF00126

PFam Domain Description : Bacterial regulatory helix-turn-helix protein, lysR family

Number of Sequence in 50% Dataset : 101

Number of Sequence in Full Dataset : 20606

Average sequence length: 59.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00126	F0LN02_THEBM_257_320	63

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00126	Q92PJ0_RHIME_108_179	99.9

Sequence based PCA Plot of the family - PF00126 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=38 Length=23
Motif2 Start=1 Length=20
Motif3 Start=27 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay