3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00125

Details:

PFam ID : PF00125

PFam Domain Description : Core histone H2A/H2B/H3/H4

Number of Sequence in 50% Dataset : 61

Number of Sequence in Full Dataset : 1077

Average sequence length: 67.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00125	D2V2D9_NAEGR_20_106	3.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00125	E9C2T1_9EUKA_107_183	92.1

Sequence based PCA Plot of the family - PF00125 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=24 Length=8
Motif2 Start=6 Length=17
Motif3 Start=64 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay