3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00122

Details:

PFam ID : PF00122

PFam Domain Description : E1-E2 ATPase

Number of Sequence in 50% Dataset : 865

Number of Sequence in Full Dataset : 8698

Average sequence length: 228.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00122	C4QSZ6_SCHMA_2_66	86.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00122	B7PBI9_IXOSC_80_234	99.9

Sequence based PCA Plot of the family - PF00122 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=95 Length=8
Motif2 Start=84 Length=8
Motif3 Start=318 Length=11
Motif4 Start=114 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay