3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00121

Details:

PFam ID : PF00121

PFam Domain Description : Triosephosphate isomerase

Number of Sequence in 50% Dataset : 117

Number of Sequence in Full Dataset : 1989

Average sequence length: 216.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00121	Q9ZB86_HELPY_1_89	81.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00121	Q9ZB86_HELPY_1_89	100

Sequence based PCA Plot of the family - PF00121 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=31 Length=8
Motif2 Start=13 Length=17
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay