3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00120

Details:

PFam ID : PF00120

PFam Domain Description : Glutamine synthetase, catalytic domain

Number of Sequence in 50% Dataset : 152

Number of Sequence in Full Dataset : 2587

Average sequence length: 247.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00120	E1ZT62_9CHLO_168_255	78.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00120	C0H551_PLAF7_109_414	99.1

Sequence based PCA Plot of the family - PF00120 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=17 Length=8
Motif2 Start=55 Length=32
Motif3 Start=34 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay