3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00119

Details:

PFam ID : PF00119

PFam Domain Description : ATP synthase A chain

Number of Sequence in 50% Dataset : 235

Number of Sequence in Full Dataset : 3821

Average sequence length: 205.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00119	F1LID9_ASCSU_1_78	86.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00119	Q8HF35_ONCMY_4_88	99.8

Sequence based PCA Plot of the family - PF00119 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=172 Length=8
Motif3 Start=273 Length=8
Motif4 Start=229 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay